Test harness for pm25_yearly_download.cwl

Source code

Workflow

Inputs

Name	Type	Default	Description
component	string[]	['BC', 'NH4', 'NIT', 'OM', 'SO4', 'SOIL', 'SS']	Optional components provided as percentages in a separate set of netCDF files
connection_name	string		The name of the section in the database.ini file or a literal None to skip over database ingestion step
database	File	{'class': 'File', 'path': 'database.ini'}	Path to database connection file, usually database.ini. This argument is ignored if connection_name == None
downloads	Directory		Local or AWS bucket folder containing netCDF grid files, downloaded and unpacked from Washington University in St. Louis (WUSTL) Box site. Annual and monthly data repositories are described in WUSTL Atmospheric Composition Analysis Group. The annual data for PM2.5 is also available in a Harvard URC AWS Bucket: s3://nsaph-public/data/exposures/wustl/
geography	string		Type of geography: zip codes or counties Supported values: “zip”, “zcta” or “county”
proxy	string?		HTTP/HTTPS Proxy if required
ram	string	2GB	Runtime memory, available to the process
shape_file_collection	string	tiger	Collection of shapefiles, either GENZ or TIGER
strategy	string	auto	Rasterization strategy, see documentation for the list of supported values and explanations
table	string	pm25_aggregated	The name of the table to store teh aggregated data in
test_script	File		File containing SQL test script
variable	string	PM25	The main variable that is being aggregated over shapes. We have tested the pipeline for PM25
years	int[]	[2000, 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010, 2011, 2012, 2013, 2014, 2015, 2016, 2017]

Outputs

Name	Type	Description
execute_aggregate_data	File[]
execute_data_dictionary	File
execute_consolidated_data	File[]
execute_shapes	array
execute_aggregate_log	array
execute_aggregate_err	File[]
execute_ingest_log	File
execute_index_log	File
execute_vacuum_log	File
execute_ingest_err	File
execute_index_err	File
execute_vacuum_err	File
verify_log	File
verify_errors	File

Steps

Name	Runs	Description
execute	pm25_yearly_download.cwl
verify	run_test.cwl