Pipeline to ingest Pollution downloaded from WashU Box

Description
Inputs
Outputs
Steps

Workflow

Description 

Workflow to aggregate pollution data coming in NetCDF format over given geographies (zip codes or counties) and ingest the aggregated data into the database

Inputs 

Name	Type	Default	Description
proxy	string?		HTTP/HTTPS Proxy if required
shapes	Directory?		Do we even need this parameter, as we isntead downloading shapes?
shape_file_collection	string	`tiger`	Collection of shapefiles, either GENZ or TIGER
downloads	Directory		Directory, containing files, downloaded and unpacked from WUSTL box
geography	string		Type of geography: zip codes or counties Valid values: “zip” or “county”
years	int[]	`[2000, 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010, 2011, 2012, 2013, 2014, 2015, 2016, 2017, 2018]`
months	int[]	`[1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12]`
band	string	`pm25`
strategy	string	`downscale`	Rasterization strategy
ram	string	`2GB`	Runtime memory, available to the process
database	File		Path to database connection file, usually database.ini
connection_name	string		The name of the section in the database.ini file

Outputs 

Name	Type	Description
data	array
aggregate_log	array
aggregate_err	array
ingest_log	array
ingest_err	array
reset_log	File
reset_err	File
index_log	File
index_err	File
vacuum_log	File
vacuum_err	File

Steps 

Name	Runs	Description
initdb	initdb.cwl	Ensure that database utilities are at their latest version
make_table_name	Evaluates JavaScript expression	Given variable and geography type (zip/county) evaluates table name
init_tables	reset.cwl	creates or recreates database tables, one for each band and geography
process	wustl_one_year.cwl	Downloads raw data and aggregates it over shapes and time
index	index.cwl
vacuum	vacuum.cwl