#!/usr/bin/env cwl-runner
### gridMET Pipeline
# Copyright (c) 2021. Harvard University
#
# Developed by Research Software Engineering,
# Faculty of Arts and Sciences, Research Computing (FAS RC)
# Author: Michael A Bouzinier
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
cwlVersion: v1.2
class: Workflow
requirements:
SubworkflowFeatureRequirement: {}
StepInputExpressionRequirement: {}
InlineJavascriptRequirement: {}
ScatterFeatureRequirement: {}
MultipleInputFeatureRequirement: {}
doc: |
Downloads and processes gridMET data (no database ingestion)
inputs:
proxy:
type: string?
default: ""
doc: HTTP/HTTPS Proxy if required
shapes:
type: Directory
geography:
type: string
doc: |
Type of geography: zip codes or counties
years:
type: string[]
default: ['1999:2008', '2011:2021']
bands:
type: string[]
default: ['rmax', 'rmin', 'sph', 'srad', 'th', 'tmmn', 'tmmx']
steps:
process:
scatter: band
in:
proxy: proxy
shapes: shapes
geography: geography
years: years
band: bands
run:
class: Workflow
inputs:
proxy:
type: string?
shapes:
type: Directory
geography:
type: string
years:
type: string[]
band:
type: string
steps:
download:
run: download.cwl
doc: Downloads and processes data
scatter: year
scatterMethod: nested_crossproduct
in:
proxy: proxy
shapes: shapes
geography: geography
year: years
band: band
out:
- data
- log
- errors
outputs:
data:
type: File[]
outputSource: download/data
download_log:
type: File[]
outputSource: download/log
download_err:
type: File[]
outputSource: download/errors
out:
- data
- download_log
- download_err
outputs:
data:
type:
type: array
items:
type: array
items: [File]
outputSource: process/data
download_log:
type:
type: array
items:
type: array
items: [File]
outputSource: process/download_log
download_err:
type:
type: array
items:
type: array
items: [File]
outputSource: process/download_err