#!/usr/bin/env cwl-runner
### Downloader of gridMET Data
# Copyright (c) 2021. Harvard University
#
# Developed by Research Software Engineering,
# Faculty of Arts and Sciences, Research Computing (FAS RC)
# Author: Michael A Bouzinier
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
cwlVersion: v1.2
class: Workflow
requirements:
InlineJavascriptRequirement: {}
doc: |
This tool preprocesses gridMET to aggregate over shapes
(zip codes or counties) and time. It produces daily mean values
inputs:
proxy:
type: string?
default: ""
doc: HTTP/HTTPS Proxy if required
strategy:
type: string
default: downscale
doc: "Rasterization strategy"
ram:
type: string
default: 2GB
doc: Runtime memory, available to the process
shapes:
type: Directory?
geography:
type: string
doc: |
Type of geography: zip codes or counties
year:
type: string
doc: "Year to process"
month:
type: int?
doc: If given, then process just one month
band:
type: string
doc: |
[Gridmet Band](https://developers.google.com/earth-engine/datasets/catalog/IDAHO_EPSCOR_GRIDMET#bands)
dates:
type: string?
doc: 'dates restriction, for testing purposes only'
input:
type: File
doc: "Downloaded file"
shape_files:
type: File[]
doc: "Paths to shape files"
domain:
type: string
table:
type: string
database:
type: File
connection_name:
type: string
registry:
type: File
steps:
aggregate:
run: aggregate_daily.cwl
in:
proxy: proxy
shapes: shapes
geography: geography
year: year
dates: dates
band: band
input: input
strategy: strategy
ram: ram
shape_files: shape_files
month: month
out:
- data
- log
- errors
ingest:
run: add_data.cwl
doc: Uploads data into the database
in:
registry: registry
domain: domain
table: table
input: aggregate/data
database: database
connection_name: connection_name
out:
- log
- errors
outputs:
aggregate_log:
type: File?
outputSource: aggregate/log
data:
type: File?
outputSource: aggregate/data
aggregate_errors:
type: File?
outputSource: aggregate/errors
ingest_log:
type: File?
outputSource: ingest/log
ingest_errors:
type: File
outputSource: ingest/errors