setup_airnow.cwl

 1#!/usr/bin/env cwl-runner
 2### Prepare environment for AirNow
 3#  Copyright (c) 2021. Harvard University
 4#
 5#  Developed by Research Software Engineering,
 6#  Faculty of Arts and Sciences, Research Computing (FAS RC)
 7#  Author: Michael A Bouzinier
 8#
 9#  Licensed under the Apache License, Version 2.0 (the "License");
10#  you may not use this file except in compliance with the License.
11#  You may obtain a copy of the License at
12#
13#         http://www.apache.org/licenses/LICENSE-2.0
14#
15#  Unless required by applicable law or agreed to in writing, software
16#  distributed under the License is distributed on an "AS IS" BASIS,
17#  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
18#  See the License for the specific language governing permissions and
19#  limitations under the License.
20#
21
22cwlVersion: v1.2
23class: CommandLineTool
24baseCommand: [python, -m, dorieh.epa.airnow_setup]
25requirements:
26  InlineJavascriptRequirement: {}
27
28doc: |
29  This tool prepares environemnt for AirNow download
30  It checks that AirNow API key is provided and installs
31  zip and county shape files if necessary
32
33inputs:
34  api-key:
35    type: string
36    inputBinding:
37      position: 1
38  shape_dir:
39    type: Directory?
40    inputBinding:
41      position: 2
42
43outputs:
44  shapes:
45    type: File[]
46    outputBinding:
47      glob: "shapes/*.shp"
48  log:
49    type: stdout
50
51stdout: setup.log