1# Licensed to the Apache Software Foundation (ASF) under one
2# or more contributor license agreements. See the NOTICE file
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4# regarding copyright ownership. The ASF licenses this file
5# to you under the Apache License, Version 2.0 (the
6# "License"); you may not use this file except in compliance
7# with the License. You may obtain a copy of the License at
8#
9# http://www.apache.org/licenses/LICENSE-2.0
10#
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12# software distributed under the License is distributed on an
13# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
14# KIND, either express or implied. See the License for the
15# specific language governing permissions and limitations
16# under the License.
17#
18
19
20FROM quay.io/ucsc_cgl/toil:latest AS dorieh
21USER root
22
23RUN mkdir /scratch/
24RUN mkdir /opt/local/
25COPY requirements.txt /opt/local/
26ENV DEBIAN_FRONTEND=noninteractive
27RUN apt update && apt install -y postgresql-client
28RUN apt install -y r-base r-base-dev
29RUN pip install --upgrade pip
30RUN pip install -r /opt/local/requirements.txt
31RUN pip install cwlref-runner