expand_aqs.cwl

#!/usr/bin/env cwl-runner
### Downloader of AQS Data
#  Copyright (c) 2021. Harvard University
#
#  Developed by Research Software Engineering,
#  Faculty of Arts and Sciences, Research Computing (FAS RC)
#  Author: Michael A Bouzinier
#
#  Licensed under the Apache License, Version 2.0 (the "License");
#  you may not use this file except in compliance with the License.
#  You may obtain a copy of the License at
#
#         http://www.apache.org/licenses/LICENSE-2.0
#
#  Unless required by applicable law or agreed to in writing, software
#  distributed under the License is distributed on an "AS IS" BASIS,
#  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
#  See the License for the specific language governing permissions and
#  limitations under the License.
#

cwlVersion: v1.2
class: CommandLineTool
baseCommand: [python, -m, epa.aqs_expand]

requirements:
  InlineJavascriptRequirement: {}

doc: |
  This tool downloads AQS data from EPA website

inputs:
  input:
    type: File[]
    inputBinding:
      position: 1
    doc: |
      A path the downloaded data file
  parameter_code:
    type: string
    inputBinding:
      prefix: --parameter_code
    doc: |
      Parameter code. Either a numeric code (e.g. 88101, 44201)
      or symbolic name (e.g. PM25, NO2).
      See more: [AQS Code List](https://www.epa.gov/aqs/aqs-code-list)

outputs:
  log:
    type: File?
    outputBinding:
      glob: "*.log"
  data:
    type: File?
    outputBinding:
      glob: "*.csv*"