#!/usr/bin/env cwl-runner
### Downloader of AirNow Data
# Copyright (c) 2021. Harvard University
#
# Developed by Research Software Engineering,
# Faculty of Arts and Sciences, Research Computing (FAS RC)
# Author: Michael A Bouzinier
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
cwlVersion: v1.2
class: CommandLineTool
baseCommand: [python, -m, epa.airnow]
requirements:
InlineJavascriptRequirement: {}
EnvVarRequirement:
envDef:
HTTPS_PROXY: $(inputs.proxy)
HTTP_PROXY: $(inputs.proxy)
doc: |
This tool downloads AirNow data from EPA website
# -p pm25 --dest airnow_pm25.json.gz --from 2020-12-25 --to 2020-12-31 --qc
inputs:
proxy:
type: string?
default: ""
doc: HTTP/HTTPS Proxy if required
parameter_code:
type: string
doc: |
Parameter code. Either a numeric code (e.g. 88101, 44201)
or symbolic name (e.g. PM25, NO2).
See more: [AQS Code List](https://www.epa.gov/aqs/aqs-code-list)
inputBinding:
prefix: --parameters
from:
type: string
doc: Start date for downolading, in YYYY-MM-DD format
inputBinding:
prefix: --from
to:
type: string
doc: End date for downolading, in YYYY-MM-DD format
inputBinding:
prefix: --to
shapes:
type: File[]
inputBinding:
prefix: --shapes
secondaryFiles:
- "^.dbf"
- "^.shx"
- "^.prj"
- "^.cpg"
table:
type: string
doc: the name of the table to be created
api-key:
type: string?
inputBinding:
prefix: --api_key
arguments:
- valueFrom: "--qc"
- valueFrom: $(inputs.table + ".json.gz")
prefix: --destination
outputs:
log:
type: File
outputBinding:
glob: "*.log"
data:
type: File
outputBinding:
glob: "*.json*"