The gen_dbt_cwl Module

Command line utility to generate a test carcass for a CWL pipeline.

Usage:

python -m nsaph.dbt.gen_dbt_cwl <path/to/cwl/workflow> [<path/to/generated/test>]

If the second argument is omitted, the test is generated in the same directory as original workflow and given a name test_<workflow_name>

Test takes the same parameters as the original workflow plus a list of files containing test cases generated by nsaph.dbt.create_test.py tool.

class CWLTestGenerator(path_to_pipeline: str, path_to_test: str)

generate()

write_test_inputs()

write_steps()

write_execute_step(test)

write_in(test)

write_out(test)

write_verify_step(test)

write_outputs()