Utility to generate outputs sections for a CWL Tool
Command line utility to generate output sections from a CWL tool or sub-workflow.
Generated sections then can be copied and pasted into any calling workflow
- collect(step: str, path: str, name=None, output=<_io.TextIOWrapper name='<stdout>' mode='w' encoding='utf-8'>, what=None)[source]
Usage
cwl_collect_outputs.py [-h] [–name NAME] step path
- Positional arguments:
step Step name in the outer (calling) workflow path Path to sub-workflow CWL file
- Options:
- -h, --help
show this help message and exit
- --name NAME
Name to be used as output prefix, defaults to the step name