NSAPH Data Platform
Contents
Introduction
What is Data Platform
Data Domains
Data Processing Pipelines
Python Packages
Data Platform Internals
Adding more data
Terms and Acronyms
Indices
NSAPH Data Platform
The app_run_generator Module
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The app_run_generator Module
class
Inputs
(
value
)
[source]
An enumeration.
database
=
'database'
connection_name
=
'connection_name'
registry
=
'registry'
classmethod
as_dict
(
registry_path
=
None
)
[source]
class
CWLAppRunnerGenerator
(
repo
:
str
,
path_to_pipeline
:
str
,
branch
:
Optional
[
str
]
=
None
)
[source]
DEF_OUPUT_TYPE
=
'csv'
fetch_metadata
(
)
[source]
generate_workflow
(
)
[source]
get_output_tables
(
)
→
Dict
[
str
,
Dict
]
[source]
get_output_files
(
)
→
List
[
str
]
[source]
fetch_from_docker_file
(
key
:
str
)
[source]
generate_app_step
(
)
[source]
generate_ingest_steps
(
)
[source]
generate_ingest_step
(
table
:
str
,
inp
:
str
,
pipeline
)
[source]
write_app_outputs
(
)
[source]
get_registry_file_name
(
)
[source]
get_domain_name
(
)
[source]
generate_registry
(
)
[source]
generate_pipeline
(
)
[source]