cwlVersion: v1.1
class: CommandLineTool
baseCommand: [python, -m, census.do_qc]
inputs:
log:
type: File
default:
class: File
location: census.log
inputBinding:
prefix: --log
in_pkl:
type: File
default:
class: File
location: census.pkl
inputBinding:
prefix: --in_pkl
qc_file:
type: File
default:
class: File
location: census_qc.yml
inputBinding:
prefix: --qc_file
qc_log:
type: string
default: census_qc.log
inputBinding:
prefix: --qc_log
outputs:
qc_log:
type: File
outputBinding:
glob: $(inputs.qc_log)